Rice Proteomics

1) Komatsu, S., Kajiwara, H. and Hirano, H., 1993. A rice protein library: a data-file of rice proteins separated by two-dimensional electrophoresis. Theor. Appl. Genet. 86, 935-942.

2) Tsugita, A., Kawakami, T., Uchiyama, Y., Kamo, M., Miyatake, N. and Nozu, Y., 1994. Separation and characterization of rice proteins. Electrophoresis 15, 708-720.

3) Komatsu, S., Masuda, T. and Abe, K. 1996. Phosphorylation of a protein (pp56) is related to the regeneration of rice cultured suspension cells. Plant Cell Physiol. 37, 748-753.

4) Hirano, H., 1997. Screening of rice genes from the cDNA catalog using the data obtained by protein sequencing. J. Protein Chem. 16, 533-536.

5) Zhong, B., Karibe, H., Komatsu, S., Ichimura, H., Nagamura, Y., Sasaki, T. and Hirano, H. 1997. Screening of rice genes from a cDNA based on the sequence data-file of proteins separated by two-dimensional electrophoresis. Breeding Sci. 47, 255-251.

6) Komatsu, S., Muhammad, A. and Rakwal, R., 1999. Separation and characterization of proteins from green and etiolated shoots of rice (Oryza sativa L.): towards a rice proteome. Electrophoresis 20, 630-636.

7) Komatsu, S., Rakwal, R. and Li., Z., 1999. Separation and characterization of proteins in rice (Oryza sativa) suspension cultured cells. Plant Cell, Tissue Organ Culture 55, 183-192.

8) Imin, N., Kerim, T., Weinman, J.J. and Rolfe, B.G.., 2001. Characterization of rice anther proteins expressed at the young microspore stage. Proteomics 1, 149-1161.

9) Mikami, S., Hori, H. and Mitsui, T. 2001. Separation of distinct components of rice Golgi complex by sucrose density gradient centrifugation. Plant Sci. 161, 665-675.

10) Koller, A., Washburn, M.P., Lange, B.M., Andon, N.L., Deciu, C., et al. 2002. Proteomic survey of metabolic pathways in rice. Proc. Natl. Acad. Sci.) 99, 11969-11974.

11) Mikami, S., Kishimoto, T., Hori, H., Mitsui, T., 2002, Technical improvement to 2D-PAGE of rice organelle membrane proteins. Biosci. Biotech. Biochem. 66, 1170-1173.

12) Salekdeh, Gh.H., Siopongco, J., Ghareyazie, B., and Bennett, J. 2002. Proteomic analysis of rice leaves during drought stress and recovery. Proteomics 2: 1131-1145.

13) Shen, S., Matsubae, M., Takao, T., Tanaka, N. and Komatsu, S., 2002. A proteomic analysis of leaf sheath from rice. J. Biochem. 132, 613-620.

14) Woo, S.H., Fukuda, M., Islam, N., Takaoka, M., Kawasaki, H., Hirano, H., 2002. Efficient peptide mapping and its application to identify embryo proteins in rice proteome analysis. Electrophoresis 23, 647-654.

15) Heazlewood, J.L., Howell, K.A., Whelan, J. and Millar, A.H., 2003. Towards an analysis of the rice mitochondrial proteome. Plant Physiol. 132, 230-242.

16) Kim, S.T., Cho, K.S., Yu, S., Kim, S.G., Hong, J.C., Han, C.-d., Bae, D.W., Nam, M.H., and Kang, K.Y. 2003. Proteomic analysis of differentially expressed proteins induced by rice blast fungus and elicitor in suspension-cultured cells. Proteomics 3: 2368-2378.

17) Komatsu, S., Konishi, H., Shen, S. and Yang, G.. 2003. Rice proteomics: a step functional analysis of the rice genome. Mol. Cell. Proteomics 2, 2-10.

18) Konishi, H. and Komatsu, S. 2003. A proteomics approach to investigating promotive effects of brassinolide on lamina inclination and root growth in rice seedlings. Biol. Pharm. Bull. 26: 401-408.

19) Shen, S., Sharma, A. and Komatsu, S. 2003. Characterization of proteins responsive to gibberellin in the leaf-sheath of rice (Oryza sativa L.) seedling using proteome analysis. Biol. Pharm. Bull. 26, 129-136.

20) Abbasi, F., Komatsu, S., 2004. A proteomic approach to analyze salt-responsive proteins in rice leaf sheath. Proteomics, 4, 2072-2081.

21) Hashimoto, M., Kisseleva, L., Sawa, S., Furukawa, T., Komatsu, S., Koshiba, T., 2004. A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway. Plant Cell Physiol. 45: 550-559.

22) Khan, M., Komatsu, S., 2004. Rice proteomics: recemt developments and analysis of nuclear proteins. Phytochemistry 65, 1671-1681.

23) Komatsu, S., Kojima, K., Suzuki, K., Ozaki, K. and Higo, K. 2004. Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003. Nucl. Acids Res. 32: 388-392.

24) Komatsu, S., Yang, S., Hayashi, N., Kaku, H., Umenura, K., Iwasaki, Y., 2004. Alterations by a defect in a rice G protein alpha subunit in probenazole and pathogen-induced responses. Plant Cell Env. 27, 947-957.

25) Oguchi, K., Tanaka, N., Komatsu, S. and Akao, S. 2004. Methylmalonate- semialdehyde dehydrogenase is induced in auxin- and zinc-stimulated root formation in rice. Plant Cell Rep., 22, 848-858.

26) Oguchi, K., Tanaka, N., Komatsu, S. and Akao, S. 2004. Characterization of NADPH-dependent oxidoreductase from rice induced by auxin and zinc. Physiol. Plant., 121, 124-131.

27) Sharma, A. Isogai, M., Yamamoto, T., Sakaguchi, K., Hashimoto, J. and Komatsu, S. 2004. A novel interaction between calreticulin and ubiquitin-like protein in rice. Plant Cell Physiol. 45, 684-692.

28) Tanaka, N., Fujita, M., Handa, H., Murayama, S., Uemura, M., Kawamura, Y., Mitsui, T., Mikami, S., Tozawa, Y., Yoshinaga, T. and Komatsu, S. 2004. Proteomics of the rice cell: Systematic identification of the protein population in subcellular compartments. Mol. Gen. Genomics 271, 566-576.

29) Tanaka, N., Konishi, H., Khan, M. and Komatsu, S., 2004a. Proteome analysis of rice tissues separated and visualized by two-dimensional electrophoresis: approach to investigating the gibberellin regulated proteins. Mol. Gen. Genomics 270, 485-496.

30) Ventelon-Debout, M., Delalande, F., Brizard, J.-P., Diemer, H., Van Dorsselaer, A. and Brugidou, C. 2004. Proteome analysis of cultivar-specific deregulations of Oryza sativa indica and O. sativa japonica cellular suspensions undergoing Rice yellow motte virus infection. Proteomics 4, 216-225.